HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6cao

System information

Experimental technique X-ray
Experimental resolution 3.45
System mass 786.46 kDa
Deposition year 2018
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 6cao
Reference Dao E. Han, Poitevin Frédéric, Sierra Raymond G., Gati Cornelius, Rao Yashas, Ciftci Halil Ibrahim, Akşit Fulya, McGurk Alex, Obrinski Trevor, Mgbam Paul, Hayes Brandon, De Lichtenberg Casper, Pardo-Avila Fatima, Corsepius Nicholas, Zhang Lindsey, Seaberg Matthew H., Hunter Mark S., Liang Mengling, Koglin Jason E., Wakatsuki Soichi, Demirci Hasan. . Structure of the 30S ribosomal decoding complex at ambient temperature RNA

Compound PAR
Residue . / 1602
Chain Y / A
Non-redundant True
Interacting RNA chains A/A
Volume 275.09 Å3
Hydrophobicity 0.016
Hydrophilicity 1.634
Buriedness 0.802
Don/acc character 1.454
SiteScore 0.717
D Score 0.437

Compound PAR
Residue . / 1603
Chain Z / A
Non-redundant False
Interacting RNA chains A/A
Volume 587.90 Å3
Hydrophobicity 0.076
Hydrophilicity 1.297
Buriedness 0.805
Don/acc character 1.361
SiteScore 1.088
D Score 0.829

Compound PAR
Residue . / 1604
Chain AA / A
Non-redundant False
Interacting RNA chains A/A
Volume 254.51 Å3
Hydrophobicity 0.021
Hydrophilicity 1.589
Buriedness 0.701
Don/acc character 1.789
SiteScore 0.766
D Score 0.540

Compound PAR
Residue . / 1605
Chain BA / A
Non-redundant False
Interacting RNA chains A/A
Volume 347.46 Å3
Hydrophobicity 0.032
Hydrophilicity 2.384
Buriedness 0.794
Don/acc character 0.841
SiteScore 0.806
D Score 0.309

Compound PAR
Residue . / 1606
Chain CA / A
Non-redundant False
Interacting RNA chains A/A
Volume 45.28 Å3
Hydrophobicity 0.014
Hydrophilicity 2.406
Buriedness 0.927
Don/acc character 0.693
SiteScore 0.881
D Score 0.171