Complex 6cao
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.45 |
| System mass | 786.46 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6cao |
| Reference | Dao E. Han, Poitevin Frédéric, Sierra Raymond G., Gati Cornelius, Rao Yashas, Ciftci Halil Ibrahim, Akşit Fulya, McGurk Alex, Obrinski Trevor, Mgbam Paul, Hayes Brandon, De Lichtenberg Casper, Pardo-Avila Fatima, Corsepius Nicholas, Zhang Lindsey, Seaberg Matthew H., Hunter Mark S., Liang Mengling, Koglin Jason E., Wakatsuki Soichi, Demirci Hasan. . Structure of the 30S ribosomal decoding complex at ambient temperature RNA |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.49 |
| Compound | PAR |
| Residue | . / 1602 |
| Chain | Y / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 275.09 Å3 |
| Hydrophobicity | 0.016 |
| Hydrophilicity | 1.634 |
| Buriedness | 0.802 |
| Don/acc character | 1.454 |
| SiteScore | 0.717 |
| D Score | 0.437 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1603 |
| Chain | Z / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 587.90 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.297 |
| Buriedness | 0.805 |
| Don/acc character | 1.361 |
| SiteScore | 1.088 |
| D Score | 0.829 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1604 |
| Chain | AA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 254.51 Å3 |
| Hydrophobicity | 0.021 |
| Hydrophilicity | 1.589 |
| Buriedness | 0.701 |
| Don/acc character | 1.789 |
| SiteScore | 0.766 |
| D Score | 0.540 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1605 |
| Chain | BA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 347.46 Å3 |
| Hydrophobicity | 0.032 |
| Hydrophilicity | 2.384 |
| Buriedness | 0.794 |
| Don/acc character | 0.841 |
| SiteScore | 0.806 |
| D Score | 0.309 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1606 |
| Chain | CA / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 45.28 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 2.406 |
| Buriedness | 0.927 |
| Don/acc character | 0.693 |
| SiteScore | 0.881 |
| D Score | 0.171 |
| Kd | — |