Complex 6cfl
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.60 |
| System mass | 4425.06 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 6cfl |
| Reference | Tereshchenkov Andrey G., Dobosz-Bartoszek Malgorzata, Osterman Ilya A., Marks James, Sergeeva Vasilina A., Kasatsky Pavel, Komarova Ekaterina S., Stavrianidi Andrey N., Rodin Igor A., Konevega Andrey L., Sergiev Petr V., Sumbatyan Natalia V., Mankin Alexander S., Bogdanov Alexey A., Polikanov Yury S.. . Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome Journal of Molecular Biology |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 232 |
| Chain | PTA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 334.43 Å3 |
| Hydrophobicity | 0.029 |
| Hydrophilicity | 1.151 |
| Buriedness | 0.644 |
| Don/acc character | 1.831 |
| SiteScore | 0.963 |
| D Score | 0.757 |
| Kd | — |
| Compound | ARG |
| Residue | . / 311 |
| Chain | TUA / 1F |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 511.41 Å3 |
| Hydrophobicity | 0.019 |
| Hydrophilicity | 2.319 |
| Buriedness | 0.725 |
| Don/acc character | 0.446 |
| SiteScore | 1.018 |
| D Score | 0.619 |
| Kd | — |
| Compound | EZM |
| Residue | . / 4035 |
| Chain | WQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 550.86 Å3 |
| Hydrophobicity | 0.360 |
| Hydrophilicity | 1.725 |
| Buriedness | 0.730 |
| Don/acc character | 0.671 |
| SiteScore | 1.171 |
| D Score | 0.816 |
| Kd | — |
| Compound | EZM |
| Residue | . / 3691 |
| Chain | XIC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 587.22 Å3 |
| Hydrophobicity | 0.739 |
| Hydrophilicity | 1.212 |
| Buriedness | 0.766 |
| Don/acc character | 1.074 |
| SiteScore | 1.195 |
| D Score | 1.004 |
| Kd | — |