HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ck4

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 155.11 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism Thermoanaerobacter
RCSB PDB Entry 6ck4
Reference Knappenberger Andrew John, Reiss Caroline Wetherington, Strobel Scott A. . Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA eLife

Compound G4P
Residue . / 214
Chain R / A
Non-redundant False
Interacting RNA chains A/A
Volume 321.39 Å3
Hydrophobicity 0.285
Hydrophilicity 1.086
Buriedness 0.631
Don/acc character 1.010
SiteScore 0.921
D Score 0.921

Compound G4P
Residue . / 208
Chain Z / B
Non-redundant True
Interacting RNA chains B/B
Volume 336.48 Å3
Hydrophobicity 0.281
Hydrophilicity 1.217
Buriedness 0.660
Don/acc character 1.429
SiteScore 0.975
D Score 0.939

Compound G4P
Residue . / 211
Chain KA / C
Non-redundant True
Interacting RNA chains C/C
Volume 139.60 Å3
Hydrophobicity 0.289
Hydrophilicity 1.124
Buriedness 0.613
Don/acc character 0.735
SiteScore 0.819
D Score 0.782

Compound G4P
Residue . / 211
Chain WA / D
Non-redundant False
Interacting RNA chains D/D
Volume 75.46 Å3
Hydrophobicity 0.460
Hydrophilicity 0.778
Buriedness 0.595
Don/acc character 1.376
SiteScore 0.712
D Score 0.698

Compound GTP
Residue . / 201
Chain E / A
Non-redundant True
Interacting RNA chains A/A
Volume 199.63 Å3
Hydrophobicity 0.087
Hydrophilicity 1.034
Buriedness 0.649
Don/acc character 1.385
SiteScore 0.688
D Score 0.632