HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ck4

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 155.11 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism Thermoanaerobacter
RCSB PDB Entry 6ck4
Reference Knappenberger Andrew John, Reiss Caroline Wetherington, Strobel Scott A. . Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA eLife

Compound G4P
Residue . / 214
Chain R / A
Non-redundant True
Interacting RNA chains A/A
Volume 469.91 Å3
Hydrophobicity 0.383
Hydrophilicity 1.040
Buriedness 0.688
Don/acc character 0.971
SiteScore 1.110
D Score 0.970

Compound G4P
Residue . / 208
Chain Z / B
Non-redundant False
Interacting RNA chains B/B
Volume 376.61 Å3
Hydrophobicity 0.282
Hydrophilicity 1.135
Buriedness 0.672
Don/acc character 1.436
SiteScore 1.132
D Score 0.973

Compound G4P
Residue . / 211
Chain KA / C
Non-redundant False
Interacting RNA chains C/C
Volume 87.81 Å3
Hydrophobicity 0.301
Hydrophilicity 0.925
Buriedness 0.607
Don/acc character 0.574
SiteScore 0.870
D Score 0.693

Compound G4P
Residue . / 211
Chain WA / D
Non-redundant False
Interacting RNA chains D/D
Volume 77.18 Å3
Hydrophobicity 0.383
Hydrophilicity 0.892
Buriedness 0.613
Don/acc character 1.206
SiteScore 0.822
D Score 0.633

Compound GTP
Residue . / 201
Chain E / A
Non-redundant True
Interacting RNA chains A/A
Volume 79.23 Å3
Hydrophobicity 0.032
Hydrophilicity 0.993
Buriedness 0.640
Don/acc character 1.405
SiteScore 0.595
D Score 0.326