HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 6ck4

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 155.11 kDa
Deposition year 2018
Molecule type RNA
# RNA entities 1
Organism Thermoanaerobacter
RCSB PDB Entry 6ck4
Reference Knappenberger Andrew John, Reiss Caroline Wetherington, Strobel Scott A. . Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA eLife

Compound G4P
Residue . / 214
Chain R / A
Non-redundant False
Interacting RNA chains A/A
Volume 312.82 Å3
Hydrophobicity 0.398
Hydrophilicity 0.977
Buriedness 0.633
Don/acc character 0.551
SiteScore 0.904
D Score 0.918

Compound G4P
Residue . / 208
Chain Z / B
Non-redundant False
Interacting RNA chains B/B
Volume 323.45 Å3
Hydrophobicity 0.409
Hydrophilicity 1.054
Buriedness 0.663
Don/acc character 0.576
SiteScore 0.977
D Score 0.994

Compound G4P
Residue . / 211
Chain KA / C
Non-redundant True
Interacting RNA chains C/C
Volume 85.06 Å3
Hydrophobicity 0.364
Hydrophilicity 0.898
Buriedness 0.599
Don/acc character 0.229
SiteScore 0.714
D Score 0.690

Compound G4P
Residue . / 211
Chain WA / D
Non-redundant False
Interacting RNA chains D/D
Volume 75.46 Å3
Hydrophobicity 0.611
Hydrophilicity 0.704
Buriedness 0.594
Don/acc character 0.879
SiteScore 0.708
D Score 0.699

Compound GTP
Residue . / 201
Chain E / A
Non-redundant True
Interacting RNA chains A/A
Volume 196.88 Å3
Hydrophobicity 0.081
Hydrophilicity 1.233
Buriedness 0.649
Don/acc character 2.554
SiteScore 0.674
D Score 0.552