Complex 6db8
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.87 |
| System mass | 67.53 kDa |
| Deposition year | 2018 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 6db8 |
| Reference | Shelke Sandip A., Shao Yaming, Laski Artur, Koirala Deepak, Weissman Benjamin P., Fuller James R., Tan Xiaohong, Constantin Tudor P., Waggoner Alan S., Bruchez Marcel P., Armitage Bruce A., Piccirilli Joseph A.. . Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif Nature Communications |
| Equivalence Class |
NR_all_59317.3
BGSU version: 4.48 |
| Compound | G4A |
| Residue | . / 101 |
| Chain | D / R |
| Non-redundant | True |
| Interacting RNA chains | B/R |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/R: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 35.67 Å3 |
| Hydrophobicity | 0.407 |
| Hydrophilicity | 0.658 |
| Buriedness | 0.471 |
| Don/acc character | 2.658 |
| SiteScore | 0.658 |
| D Score | 0.478 |
| Kd | — |