Harnessing RIBOnucleic acid - Small molecules Structures
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Apramycin bound to the 30S body
SM: AM2 AM2 AM2
Gentamicin bound to the 30S body
SM: LLL LLL LLL LLL
Tiamulin bound to the 50S subunit
SM: MUL P8F P8F
Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
SM: GTP
Crystal structure of phyllanthoside bound to the Candida albicans 80S ribosome
SM: 3K5 3K5
Crystal structure of the Candida albicans 80S ribosome in complex with Hygromycin B
SM: 3K5 3K5 HYG HYG
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
SM: 3K5 3K5 GET GET
Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
SM: V7A V7A
Human mitochondrial small subunit assembly intermediate (State C)
SM: NAD
Human mitochondrial small subunit assembly intermediate (State D)
Human mitochondrial small subunit assembly intermediate (State E)
Human mitochondrial small subunit assembly intermediate (State C*)
Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
SM: V7A
Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map
Crystal structure of theophylline aptamer in complex with theophylline
SM: TEP TEP
Crystal structure of theophylline aptamer in complex with TAL3
SM: QB3 QB3
Crystal structure of theophylline aptamer in complex with TAL2
SM: QAX QAX
Crystal structure of theophylline aptamer in complex with TAL1
SM: QIJ QIJ QIJ QIJ
Crystal structure of theophylline aptamer in complex with TAL4
SM: QEU QEU
T7 RNA polymerase elongation complex with unnatural base dDs-PaTP pair
SM: S8L
T7 RNA polymerase elongation complex with unnatural base dPa-DsTP pair
SM: S96 S96
T7 RNA polymerase elongation complex with unnatural base dPa-ATP mismatch
SM: ATP ATP ATP ATP
E. coli 50S ribosome bound to compound streptogramin A analog 3142
SM: UE6
E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1
SM: UCX UDF
E. coli 50S ribosome bound to compound streptogramin A analog 3146
SM: UEC
E. coli 50S ribosome bound to solithromycin and VM1
SM: EM1 VIR
E. coli 50S ribosome bound to tiamulin and VS1
SM: MUL
E. coli 50S ribosome bound to tiamulin and azithromycin
SM: MUL ZIT
E. coli 50S ribosome bound to compound streptogramin A analog 3336
SM: UI0
E. coli 50S ribosome bound to antibiotic analog SLC09
SM: UI9
E. coli 50S ribosome bound to antibiotic analog SLC30
SM: UIF
E. coli 50S ribosome bound to antibiotic analog SLC31
SM: UH0
Human DNA polymerase eta-DNA-rG-ended primer-dGMPNPP ternary mismatch complex with Mn2+
SM: XG4
Human DNA polymerase eta-DNA-rC-ended primer-dGMPNPP ternary mismatch complex with Mn2+
Human DNA polymerase eta-DNA-rA-ended primer-dGMPNPP ternary mismatch complex with Mg2+
Human DNA polymerase eta-DNA-rU-ended primer-dGMPNPP ternary mismatch complex with Mg2+
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:ground state at pH7.0 (K+ MES) with 1 Ca2+ ion
SM: DGT
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 30s
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 60s
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 90s
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 120s
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 180s
Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 300s
Human DNA polymerase eta-DNA-rG-ended primer-dGMPNPP ternary mismatch complex with Mg2+
Human DNA polymerase eta-DNA-rC-ended primer-dGMPNPP ternary mismatch complex with Mg2+
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
SM: PAR SPM
M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP
SM: G2P
Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
SM: T8B
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
M. tuberculosis RNAP elongation complex with NusG and CMPCPP
SM: 2TM
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
SM: AKN AKN AKN AKN AKN AKN AKN AKN
Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
SM: KAN KAN KAN KAN KAN KAN KAN
Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
SM: GDP
M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP
Structure of Beetroot dimer bound to DFAME
SM: X5R X5R
Structure of Beetroot dimer bound to DFHO
SM: 747 747
Beetroot dimer bound to ThT
SM: TFX TFX
Wobble Beetroot (A16U-U38G) dimer bound to DFHO
Apo structure of the TPP riboswitch aptamer domain
SM: PG4
PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform
SM: PRF PRF PRF PRF PRF PRF
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8