HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8dh4

System information

Experimental technique X-ray
Experimental resolution 2.80
System mass 445.25 kDa
Deposition year 2022
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 8dh4
Reference Oh Juntaek, Kimoto Michiko, Xu Haoqing, Chong Jenny, Hirao Ichiro, Wang Dong. . Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase Nature Communications

Compound S96
Residue . / 901
Chain Q / B
Non-redundant True
Interacting RNA chains C/C
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains C/C: synthetic construct
RNA family global synthetic construct
Volume 602.65 Å3
Hydrophobicity 0.588
Hydrophilicity 1.063
Buriedness 0.823
Don/acc character 0.732
SiteScore 1.084
D Score 1.088
Kd

Compound S96
Residue . / 901
Chain S / E
Non-redundant True
Interacting RNA chains G/G
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains G/G: synthetic construct
RNA family global synthetic construct
Volume 431.84 Å3
Hydrophobicity 0.173
Hydrophilicity 1.185
Buriedness 0.764
Don/acc character 0.681
SiteScore 1.044
D Score 1.012
Kd