HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cvo

System information

Experimental technique Electron Microscopy
Experimental resolution 2.95
System mass 631.41 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 1
Organism Cutibacterium
RCSB PDB Entry 8cvo
Reference Lomakin Ivan B, Devarkar Swapnil C, Patel Shivali, Grada Ayman, Bunick Christopher G. . Sarecycline inhibits protein translation inCutibacterium acnes70S ribosome using a two-site mechanism Nucleic Acids Research
Equivalence Class NR_all_86966.1
BGSU version: 4.48

Compound V7A
Residue . / 1601
Chain J / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/A: rRNA
RNA family global rRNA
Volume 154.35 Å3
Hydrophobicity 0.256
Hydrophilicity 0.930
Buriedness 0.691
Don/acc character 2.460
SiteScore 0.891
D Score 0.698
Kd