HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cgr

System information

Experimental technique Electron Microscopy
Experimental resolution 2.12
System mass 1599.76 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 2
Organism Escherichia
RCSB PDB Entry 8cgr
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Compound AM2
Residue . / 1603
Chain Q / A
Non-redundant True
Interacting RNA chains A/A, N/a
Volume 406.11 Å3
Hydrophobicity 0.210
Hydrophilicity 1.000
Buriedness 0.671
Don/acc character 2.496
SiteScore 0.990
D Score 1.016

Compound AM2
Residue . / 1604
Chain R / A
Non-redundant True
Interacting RNA chains A/A
Volume 637.64 Å3
Hydrophobicity 0.120
Hydrophilicity 1.161
Buriedness 0.707
Don/acc character 1.557
SiteScore 1.006
D Score 0.985

Compound AM2
Residue . / 1605
Chain S / A
Non-redundant True
Interacting RNA chains A/A
Volume 55.22 Å3
Hydrophobicity 0.173
Hydrophilicity 0.851
Buriedness 0.606
Don/acc character 2.933
SiteScore 0.507
D Score 0.425