HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cgr

System information

Experimental technique Electron Microscopy
Experimental resolution 2.12
System mass 1599.76 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8cgr
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Compound AM2
Residue . / 1603
Chain Q / A
Non-redundant True
Interacting RNA chains A/A, N/a
Volume 308.70 Å3
Hydrophobicity 0.132
Hydrophilicity 1.037
Buriedness 0.671
Don/acc character 2.352
SiteScore 1.133
D Score 1.005

Compound AM2
Residue . / 1604
Chain R / A
Non-redundant True
Interacting RNA chains A/A
Volume 699.03 Å3
Hydrophobicity 0.150
Hydrophilicity 1.098
Buriedness 0.708
Don/acc character 1.855
SiteScore 1.157
D Score 1.007

Compound AM2
Residue . / 1605
Chain S / A
Non-redundant True
Interacting RNA chains A/A
Volume 55.91 Å3
Hydrophobicity 0.110
Hydrophilicity 0.901
Buriedness 0.605
Don/acc character 3.103
SiteScore 0.675
D Score 0.446