Complex 8cgr
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.12 |
| System mass | 1599.76 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 8cgr |
| Reference | Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_83717.186,
NR_all_56726.171
BGSU version: 4.49 |
| Compound | AM2 |
| Residue | . / 1603 |
| Chain | Q / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, N/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA, N/a: rRNA |
| RNA family global | rRNA |
| Volume | 308.70 Å3 |
| Hydrophobicity | 0.132 |
| Hydrophilicity | 1.037 |
| Buriedness | 0.671 |
| Don/acc character | 2.352 |
| SiteScore | 1.133 |
| D Score | 1.005 |
| Kd | — |
| Compound | AM2 |
| Residue | . / 1604 |
| Chain | R / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 699.03 Å3 |
| Hydrophobicity | 0.150 |
| Hydrophilicity | 1.098 |
| Buriedness | 0.708 |
| Don/acc character | 1.855 |
| SiteScore | 1.157 |
| D Score | 1.007 |
| Kd | — |
| Compound | AM2 |
| Residue | . / 1605 |
| Chain | S / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 55.91 Å3 |
| Hydrophobicity | 0.110 |
| Hydrophilicity | 0.901 |
| Buriedness | 0.605 |
| Don/acc character | 3.103 |
| SiteScore | 0.675 |
| D Score | 0.446 |
| Kd | — |