HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cgu

System information

Experimental technique Electron Microscopy
Experimental resolution 1.89
System mass 1599.80 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8cgu
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Compound LLL
Residue . / 1603
Chain Q / A
Non-redundant True
Interacting RNA chains A/A
Volume 53.85 Å3
Hydrophobicity 0.135
Hydrophilicity 0.784
Buriedness 0.543
Don/acc character 2.405
SiteScore 0.802
D Score 0.634

Compound LLL
Residue . / 1604
Chain R / A
Non-redundant True
Interacting RNA chains A/A
Volume 597.51 Å3
Hydrophobicity 0.101
Hydrophilicity 1.158
Buriedness 0.748
Don/acc character 2.449
SiteScore 1.183
D Score 1.011

Compound LLL
Residue . / 1605
Chain S / A
Non-redundant True
Interacting RNA chains A/A
Volume 178.70 Å3
Hydrophobicity 0.079
Hydrophilicity 0.959
Buriedness 0.658
Don/acc character 3.562
SiteScore 0.787
D Score 0.571

Compound LLL
Residue . / 1606
Chain T / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -