HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8e86

System information

Experimental technique X-ray
Experimental resolution 1.78
System mass 55.31 kDa
Deposition year 2022
Molecule type RNA/DNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 8e86
Reference Chang Caleb, Lee Luo Christie, Eleraky Sarah, Lin Aaron, Zhou Grace, Gao Yang. . Primer terminal ribonucleotide alters the active site dynamics of DNA polymerase η and reduces DNA synthesis fidelity Journal of Biological Chemistry

Compound XG4
Residue . / 501
Chain D / A
Non-redundant True
Interacting RNA chains C/P
RNA environment detailled DNA, protein, ion
RNA environment global RNA/DNA/Protein
RNA family chains C/P: RNA/DNA_hybrid
RNA family global RNA/DNA_hybrid
Volume 332.37 Å3
Hydrophobicity 0.170
Hydrophilicity 1.540
Buriedness 0.733
Don/acc character 0.342
SiteScore 1.023
D Score 0.878
Kd