Complex 8cre
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.00 |
| System mass | 6404.39 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 8cre |
| Reference | Kolosova Olga, Zgadzay Yury, Stetsenko Artem, Sukhinina Anastasia P., Atamas Anastasia, Validov Shamil, Rogachev Andrey, Usachev Konstantin, Jenner Lasse, Dmitriev Sergey E., Yusupova Gulnara, Guskov Albert, Yusupov Marat. . Mechanism of read-through enhancement by aminoglycosides and mefloquine Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_22526.9,
NR_all_58155.3
BGSU version: 4.49 |
| Compound | 3K5 |
| Residue | . / 3402 |
| Chain | IF / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 533.37 Å3 |
| Hydrophobicity | 0.221 |
| Hydrophilicity | 1.111 |
| Buriedness | 0.735 |
| Don/acc character | 1.490 |
| SiteScore | 1.175 |
| D Score | 1.019 |
| Kd | — |
| Compound | 3K5 |
| Residue | . / 3401 |
| Chain | XJA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 529.59 Å3 |
| Hydrophobicity | 0.216 |
| Hydrophilicity | 1.162 |
| Buriedness | 0.764 |
| Don/acc character | 1.123 |
| SiteScore | 1.194 |
| D Score | 1.019 |
| Kd | — |
| Compound | GET |
| Residue | . / 1801 |
| Chain | CDA / B |
| Non-redundant | True |
| Interacting RNA chains | TA/B |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/B: rRNA |
| RNA family global | rRNA |
| Volume | 104.62 Å3 |
| Hydrophobicity | 0.084 |
| Hydrophilicity | 0.987 |
| Buriedness | 0.589 |
| Don/acc character | 1.433 |
| SiteScore | 0.835 |
| D Score | 0.648 |
| Kd | — |
| Compound | GET |
| Residue | . / 1904 |
| Chain | EAB / CM |
| Non-redundant | True |
| Interacting RNA chains | UD/CM |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | UD/CM: rRNA |
| RNA family global | rRNA |
| Volume | 324.14 Å3 |
| Hydrophobicity | 0.182 |
| Hydrophilicity | 1.119 |
| Buriedness | 0.689 |
| Don/acc character | 1.717 |
| SiteScore | 1.144 |
| D Score | 0.989 |
| Kd | — |