HARIBOSS - RNA-SM complexes list

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Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP

SM: C2E C2E C2E C2E

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Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state

SM: PRF

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Crystal structure of guanine riboswitch C61U/G37A double mutant bound to thio-guanine

SM: DX4 DX4 DX4 DX4

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RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with ATP

SM: ATP

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RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP

SM: GTP

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Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue

SM: JS6 JS6

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The structure of the tetrahydrofolate riboswitch containing a U25C mutation

SM: FFO

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine

SM: GNG GNG

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Crystal structure of the 2'- deoxyguanosine riboswitch bound to 2'-deoxyguanosine, iridium hexammine soak

SM: GNG GNG

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cobalt Hexammine soak

SM: GNG GNG

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, manganese Soak

SM: GNG GNG

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'- Deoxyguanosine, cesium soak

SM: GNG GNG

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Crystal structure of the 2'- deoxyguanosine riboswitch bound to guanosine

SM: GMP GMP

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine-5'-monophosphate

SM: DGP DGP

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Crystal structure of the 2'- Deoxyguanosine riboswitch bound to guanosine-5'-monophosphate

SM: 5GP 5GP

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Crystal structure of THF riboswitch, bound with 5-formyl-THF

SM: FFO

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Crystal structure of THF riboswitch, bound with THF

SM: THF

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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

SM: PAR

3t1y

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Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

SM: PAR

3td1

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Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin

SM: GET GET

3tzr

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Structure of a Riboswitch-like RNA-ligand complex from the Hepatitis C Virus Internal Ribosome Entry Site

SM: SS0

3v71

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Crystal structure of PUF-6 in complex with 5BE13 RNA

SM: EPE

3v7e

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Crystal structure of YbxF bound to the SAM-I riboswitch aptamer

SM: SAM SAM

3vnu

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Complex structure of viral RNA polymerase I

SM: ATP

3vnv

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Complex structure of viral RNA polymerase II

SM: CH1

3wfr

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tRNA processing enzyme complex 2

SM: CTP CTP CTP CTP

3wqy

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Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase in complex with wild-type tRNA(Ala) having G3.U70

SM: A5A

3wru

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Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA group

SM: SJP SJP

3zgz

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Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation

SM: 84T 84T

4a3e

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RNA Polymerase II initial transcribing complex with a 5nt DNA-RNA hybrid and soaked with AMPCPP

SM: APC

4a3f

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RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid and soaked with AMPCPP

SM: APC

4a3j

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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP

SM: G2P

4a3l

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RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid and soaked with AMPCPP

SM: APC

4a3m

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RNA Polymerase II initial transcribing complex with a 4nt DNA-RNA hybrid and soaked with AMPCPP

SM: APC

4aob

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SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine

SM: SAM

4aqy

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Structure of ribosome-apramycin complexes

SM: AM2 AM2 AM2 AM2 AM2

4b3m

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Crystal structure of the 30S ribosome in complex with compound 1

SM: ON0

4b3r

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Crystal structure of the 30S ribosome in complex with compound 30

SM: M5Z

4b3s

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Crystal structure of the 30S ribosome in complex with compound 37

SM: RPO

4b3t

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Crystal structure of the 30S ribosome in complex with compound 39

SM: 3TS

4b5r

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SAM-I riboswitch bearing the H. marismortui K-t-7

SM: SAM

4bwm

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KlenTaq mutant in complex with a RNA/DNA hybrid

SM: DCT

4by1

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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP

SM: APC

4cqn

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Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue

SM: ILA ILA

4dr2

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR

4dr3

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

SM: SRY

4dr4

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR

4dr5

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

SM: SRY

4dr6

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

SM: SRY

4dr7

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

SM: SRY

4duz

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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

SM: SRY

4dv1

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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

SM: SRY

4dv3

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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

SM: SRY

4dv5

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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

SM: SRY

4dv7

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Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin

SM: SRY

4e8k

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Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate

SM: EPE EPE EPE EPE EPE SPM

4e8m

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Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+

SM: EPE EPE EPE EPE EPE SPM SPM

4e8n

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Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+

SM: EPE EPE SPM

4e8p

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Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+

SM: EPE EPE EPE EPE SPM

4e8q

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Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+

SM: EPE EPE EPE SPM