HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3q3z

System information

Experimental technique X-ray
Experimental resolution 2.51
System mass 51.77 kDa
Deposition year 2010
Molecule type RNA
# RNA entities 1
Organism Clostridium
RCSB PDB Entry 3q3z
Reference Smith Kathryn D., Shanahan Carly A., Moore Emily L., Simon Aline C., Strobel Scott A.. . Structural basis of differential ligand recognition by two classes of bis-(3′-5′)-cyclic dimeric guanosine monophosphate-binding riboswitches Proceedings of the National Academy of Sciences
Equivalence Class NR_all_65073.3
BGSU version: 4.48

Compound C2E
Residue . / 1
Chain C / V
Non-redundant True
Interacting RNA chains A/V
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/V: riboswitch
RNA family global riboswitch
Volume 588.93 Å3
Hydrophobicity 0.217
Hydrophilicity 1.074
Buriedness 0.659
Don/acc character 3.000
SiteScore 1.124
D Score 0.985
Kd 2.2nM

Compound C2E
Residue . / 84
Chain H / V
Non-redundant True
Interacting RNA chains A/V
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/V: riboswitch
RNA family global riboswitch
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd 2.2nM

Compound C2E
Residue . / 2
Chain L / A
Non-redundant True
Interacting RNA chains B/A
RNA environment detailled ion
RNA environment global RNA
RNA family chains B/A: riboswitch
RNA family global riboswitch
Volume 547.43 Å3
Hydrophobicity 0.299
Hydrophilicity 0.954
Buriedness 0.657
Don/acc character 2.821
SiteScore 1.139
D Score 1.023
Kd 2.2nM

Compound C2E
Residue . / 84
Chain Q / A
Non-redundant True
Interacting RNA chains B/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/A: riboswitch
RNA family global riboswitch
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd 2.2nM