HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3rkf

System information

Experimental technique X-ray
Experimental resolution 2.50
System mass 90.95 kDa
Deposition year 2011
Molecule type RNA
# RNA entities 1
Organism Bacillus
RCSB PDB Entry 3rkf
Reference Buck Janina, Wacker Anna, Warkentin Eberhart, Wöhnert Jens, Wirmer-Bartoschek Julia, Schwalbe Harald. . Influence of ground-state structure and Mg 2+ binding on folding kinetics of the guanine-sensing riboswitch aptamer domain Nucleic Acids Research

Compound DX4
Residue . / 91
Chain E / A
Non-redundant False
Interacting RNA chains A/A
Volume 139.94 Å3
Hydrophobicity 0.105
Hydrophilicity 1.780
Buriedness 0.823
Don/acc character 0.434
SiteScore 0.923
D Score 0.647

Compound DX4
Residue . / 91
Chain O / B
Non-redundant False
Interacting RNA chains B/B
Volume 178.02 Å3
Hydrophobicity 0.056
Hydrophilicity 1.410
Buriedness 0.763
Don/acc character 0.954
SiteScore 0.901
D Score 0.756

Compound DX4
Residue . / 91
Chain U / C
Non-redundant True
Interacting RNA chains C/C
Volume 160.87 Å3
Hydrophobicity 0.000
Hydrophilicity 1.653
Buriedness 0.795
Don/acc character 0.588
SiteScore 0.950
D Score 0.730

Compound DX4
Residue . / 91
Chain AA / D
Non-redundant False
Interacting RNA chains D/D
Volume 191.39 Å3
Hydrophobicity 0.339
Hydrophilicity 1.433
Buriedness 0.812
Don/acc character 0.769
SiteScore 0.930
D Score 0.772