Complex 3v7e
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 102.63 kDa |
| Deposition year | 2011 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Caldanaerobacter |
| RCSB PDB Entry | 3v7e |
| Reference | Baird Nathan J., Zhang Jinwei, Hamma Tomoko, Ferré-D'Amaré Adrian R.. 2012. YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops RNA |
| Equivalence Class |
NR_all_47433.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAM |
| Residue | . / 913 |
| Chain | Q / C |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/C: riboswitch |
| RNA family global | riboswitch |
| Volume | 708.30 Å3 |
| Hydrophobicity | 0.340 |
| Hydrophilicity | 1.085 |
| Buriedness | 0.781 |
| Don/acc character | 1.362 |
| SiteScore | 1.205 |
| D Score | 1.055 |
| Kd | — |
| Compound | SAM |
| Residue | . / 407 |
| Chain | KA / D |
| Non-redundant | False |
| Interacting RNA chains | D/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | D/D: riboswitch |
| RNA family global | riboswitch |
| Volume | 745.00 Å3 |
| Hydrophobicity | 0.427 |
| Hydrophilicity | 1.156 |
| Buriedness | 0.784 |
| Don/acc character | 1.261 |
| SiteScore | 1.207 |
| D Score | 1.034 |
| Kd | — |