HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3skz

System information

Experimental technique X-ray
Experimental resolution 2.61
System mass 45.56 kDa
Deposition year 2011
Molecule type RNA
# RNA entities 1
Organism Mesoplasma
RCSB PDB Entry 3skz
Reference Pikovskaya Olga, Polonskaia Anna, Patel Dinshaw J, Serganov Alexander. . Structural principles of nucleoside selectivity in a 2′-deoxyguanosine riboswitch Nature Chemical Biology

Compound GMP
Residue . / 120
Chain C / A
Non-redundant True
Interacting RNA chains A/A
Volume 482.60 Å3
Hydrophobicity 0.187
Hydrophilicity 1.295
Buriedness 0.720
Don/acc character 0.942
SiteScore 1.165
D Score 0.950

Compound GMP
Residue . / 120
Chain K / B
Non-redundant False
Interacting RNA chains B/B
Volume 641.41 Å3
Hydrophobicity 0.191
Hydrophilicity 1.342
Buriedness 0.774
Don/acc character 1.045
SiteScore 1.200
D Score 0.967