HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 3skz

System information

Experimental technique X-ray
Experimental resolution 2.61
System mass 45.56 kDa
Deposition year 2011
Molecule type RNA
# RNA entities 1
Organism Mesoplasma
RCSB PDB Entry 3skz
Reference Pikovskaya Olga, Polonskaia Anna, Patel Dinshaw J, Serganov Alexander. . Structural principles of nucleoside selectivity in a 2′-deoxyguanosine riboswitch Nature Chemical Biology

Compound GMP
Residue . / 120
Chain C / A
Non-redundant True
Interacting RNA chains A/A
Volume 478.48 Å3
Hydrophobicity 0.133
Hydrophilicity 1.288
Buriedness 0.712
Don/acc character 1.223
SiteScore 1.010
D Score 0.948

Compound GMP
Residue . / 120
Chain K / B
Non-redundant False
Interacting RNA chains B/B
Volume 592.36 Å3
Hydrophobicity 0.217
Hydrophilicity 1.360
Buriedness 0.755
Don/acc character 1.044
SiteScore 1.038
D Score 0.950