Complex 4aob
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.95 |
| System mass | 33.35 kDa |
| Deposition year | 2012 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Caldanaerobacter |
| RCSB PDB Entry | 4aob |
| Reference | Schroeder Kersten T., Daldrop Peter, McPhee Scott A., Lilley David M.J.. 2012. Structure and folding of a rare, natural kink turn in RNA with an A•A pair at the 2b•2n position RNA |
| Equivalence Class |
NR_all_29205.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAM |
| Residue | . / 1116 |
| Chain | W / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 621.52 Å3 |
| Hydrophobicity | 0.363 |
| Hydrophilicity | 1.121 |
| Buriedness | 0.760 |
| Don/acc character | 1.300 |
| SiteScore | 1.192 |
| D Score | 1.031 |
| Kd | 0.49uM |