Complex 3pip
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.45 |
| System mass | 1367.64 kDa |
| Deposition year | 2010 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Deinococcus |
| RCSB PDB Entry | 3pip |
| Reference | Belousoff Matthew J., Shapira Tal, Bashan Anat, Zimmerman Ella, Rozenberg Haim, Arakawa Kenji, Kinashi Haruyasu, Yonath Ada. . Crystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_88987.11
BGSU version: 4.48 |
| Compound | LC2 |
| Residue | . / 2881 |
| Chain | EA / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 578.64 Å3 |
| Hydrophobicity | 0.829 |
| Hydrophilicity | 0.839 |
| Buriedness | 0.826 |
| Don/acc character | 1.710 |
| SiteScore | 1.213 |
| D Score | 1.084 |
| Kd | — |
| Compound | LMA |
| Residue | . / 2882 |
| Chain | FA / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 290.86 Å3 |
| Hydrophobicity | 0.260 |
| Hydrophilicity | 1.437 |
| Buriedness | 0.792 |
| Don/acc character | 1.224 |
| SiteScore | 0.827 |
| D Score | 0.637 |
| Kd | — |