Complex 3wqy
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 230.53 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Archaeoglobus |
| RCSB PDB Entry | 3wqy |
| Reference | Naganuma Masahiro, Sekine Shun-ichi, Chong Yeeting Esther, Guo Min, Yang Xiang-Lei, Gamper Howard, Hou Ya-Ming, Schimmel Paul, Yokoyama Shigeyuki. 2014. The selective tRNA aminoacylation mechanism based on a single G•U pair Nature |
| Equivalence Class |
NR_all_69638.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | A5A |
| Residue | . / 1001 |
| Chain | D / A |
| Non-redundant | True |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/C: tRNA |
| RNA family global | tRNA |
| Volume | 372.50 Å3 |
| Hydrophobicity | 1.077 |
| Hydrophilicity | 1.121 |
| Buriedness | 0.824 |
| Don/acc character | 0.865 |
| SiteScore | 1.084 |
| D Score | 1.069 |
| Kd | — |