Complex 3muv
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.20 |
| System mass | 41.95 kDa |
| Deposition year | 2010 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Vibrio |
| RCSB PDB Entry | 3muv |
| Reference | Smith Kathryn D., Lipchock Sarah V., Livingston Alison L., Shanahan Carly A., Strobel Scott A.. 2010. Structural and Biochemical Determinants of Ligand Binding by the c-di-GMP Riboswitch, Biochemistry |
| Equivalence Class |
NR_all_12260.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 2BA |
| Residue | . / 358 |
| Chain | C / R |
| Non-redundant | True |
| Interacting RNA chains | B/R |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/R: riboswitch |
| RNA family global | riboswitch |
| Volume | 339.23 Å3 |
| Hydrophobicity | 0.575 |
| Hydrophilicity | 1.019 |
| Buriedness | 0.712 |
| Don/acc character | 1.275 |
| SiteScore | 1.164 |
| D Score | 1.035 |
| Kd | — |