HARIBOSS - RNA-SM complexes list

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Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

SM: AKN AKN

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

SM: 3HE

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

SM: 3HE

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

SM: 3HE

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Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

SM: 3HE

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Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

SM: GDP

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Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

SM: GDP

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Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

SM: GDP

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Cryo-EM structure of RNA device 43, holo state

SM: TAC

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

SM: ARG ARG

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

SM: ARG ARG

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tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-2"-phosphate and 2'-OH RNA

SM: 9SO

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Class III PreQ1 riboswitch double mutant U8C/A85G

SM: PRF

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Structure of Mango III variant aptamer bound to T01-07M-B

SM: W6F

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Structure of Mango II aptamer bound to T01-6A

SM: VK0 VK0 VK0

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Structure of Mango II aptamer bound to T01-6A-B

SM: VKI

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Structure of Mango II variant aptamer bound to T01-6A-B

SM: VLR VLR VLR

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Structure of Mango II variant aptamer bound to T01-7M-B

SM: W6F W6F

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Structure of Mango II variant2 aptamer bound to T01-6A

SM: VK0 VK0 VK0

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Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)

SM: DCP

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Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

SM: WC9 WC9

8ud7

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

SM: WC9 WC9

8ud8

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Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

SM: WC9

8uiw

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yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N

SM: CTI CTI

8ut0

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Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

SM: 3HE

8uta

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yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N

SM: PRL PRL

8uti

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Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

SM: 3HE

8uvr

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Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

SM: SCM SCM

8uvs

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Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

SM: Y7K Y7K

8uw3

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Human LINE-1 retrotransposon ORF2 protein engaged with template RNA in elongation state

SM: TTP

8vaw

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Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer

SM: DGP DGP

8vax

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Cadmium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer

SM: DGP DGP

8vft

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Translating 80S rabbit ribosome stalled by emetine with eEF2

SM: 34G

8vpk

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Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

SM: ERY

8vpv

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Class III PreQ1 riboswitch mutant delta84

SM: PRF

8vqv

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Structure of S. odontolytica ZTP riboswitch bound to m-1-pyridinyl-AICA

SM: UG4

8vr4

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Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

SM: ERY

8vr8

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Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-B-Clm

SM: CLM

8vrl

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Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

SM: CLM

8vtw

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Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

SM: ARG ARG

8vty

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Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

SM: ARG ARG CPF CPF

8vuo

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Crystal structure of SARS-CoV-2 nsp16/nsp10 in complex with Cap-1 RNA

SM: SAH SAH

8vvj

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Structure of S. odontolytica ZTP riboswitch bound to m-1-pyridinyl-AICA

SM: A1AD3

8vvp

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Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

SM: ANM SPM SPM

8vvq

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Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

SM: 5GP ANM

8vvr

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Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

SM: ANM

8vvs

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Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

SM: ANM

8vvt

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Mammalian ribosomes bound to Anisomycin in the rotated conformation

SM: ANM

8vvu

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Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

SM: ANM

8vxx

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Mango II bound to 365A-061

SM: A1AEC A1AEC A1AEC

8vxz

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Mango II bound to 365A-084

SM: A1AED A1AED A1AED

8vy0

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Mango II bound to 365A-087

SM: A1AEE A1AEE A1AEE

8vy1

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Mango II bound to 365A-088

SM: A1AEF A1AEF A1AEF

8wal

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Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positioned 3nt downstream of TSS.

SM: W0F

8wan

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Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positioned 4nt downstream of TSS.

SM: W0F

8war

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Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS.

SM: W0F

8xko

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CryoEM structure of compound HNC-1664 bound with RdRP-RNA complex of SARS-CoV-2

SM: A1LVZ

8xpo

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Cryo-EM structure of Lassa virus RdRP elongation complex with the NTP form of compound HNC-1664 bound in the active site

SM: A1LVZ

8xsx

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Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

SM: T1C T1C T1C T1C T1C T1C T1C

8xsy

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Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

SM: T1C T1C T1C T1C T1C T1C T1C T1C