Complex 8ud6
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.70 |
| System mass | 4566.18 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Tequatrovirus |
| RCSB PDB Entry | 8ud6 |
| Reference | Wu Kelvin J. Y., Tresco Ben I. C., Ramkissoon Antonio, Aleksandrova Elena V., Syroegin Egor A., See Dominic N. Y., Liow Priscilla, Dittemore Georgia A., Yu Meiyi, Testolin Giambattista, Mitcheltree Matthew J., Liu Richard Y., Svetlov Maxim S., Polikanov Yury S., Myers Andrew G.. . An antibiotic preorganized for ribosomal binding overcomes antimicrobial resistance Science |
| Equivalence Class |
NR_all_35542.165,
NR_all_97519.80
BGSU version: 4.48 |
| Compound | WC9 |
| Residue | . / 4061 |
| Chain | CSA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A, CB/1x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA, CB/1x: tRNA |
| RNA family global | multiple |
| Volume | 339.91 Å3 |
| Hydrophobicity | 0.600 |
| Hydrophilicity | 0.974 |
| Buriedness | 0.673 |
| Don/acc character | 0.916 |
| SiteScore | 0.997 |
| D Score | 1.026 |
| Kd | — |
| Compound | WC9 |
| Residue | . / 3772 |
| Chain | NMC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A, GD/2x |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/2A: rRNA, GD/2x: tRNA |
| RNA family global | multiple |
| Volume | 347.12 Å3 |
| Hydrophobicity | 0.805 |
| Hydrophilicity | 0.784 |
| Buriedness | 0.671 |
| Don/acc character | 1.293 |
| SiteScore | 1.182 |
| D Score | 1.087 |
| Kd | — |