HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8uiw

System information

Experimental technique X-ray
Experimental resolution 2.77
System mass 180.54 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Ruminococcus
RCSB PDB Entry 8uiw
Reference Krochmal Daniel, Roman Christina, Lewicka Anna, Shao Yaming, Piccirilli Joseph A.. . Structural basis for promiscuity in ligand recognition by yjdF riboswitch Cell Discovery
Equivalence Class NR_all_66812.3
BGSU version: 4.48

Compound CTI
Residue . / 202
Chain H / N
Non-redundant True
Interacting RNA chains A/N
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/N: riboswitch
RNA family global riboswitch
Volume 811.88 Å3
Hydrophobicity 0.787
Hydrophilicity 1.071
Buriedness 0.780
Don/acc character 1.477
SiteScore 1.055
D Score 1.059
Kd

Compound CTI
Residue . / 205
Chain M / R
Non-redundant True
Interacting RNA chains B/R
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/R: riboswitch
RNA family global riboswitch
Volume 665.08 Å3
Hydrophobicity 0.741
Hydrophilicity 0.957
Buriedness 0.721
Don/acc character 1.664
SiteScore 1.032
D Score 1.061
Kd