Complex 8uiw
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.77 |
| System mass | 180.54 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Ruminococcus |
| RCSB PDB Entry | 8uiw |
| Reference | Krochmal Daniel, Roman Christina, Lewicka Anna, Shao Yaming, Piccirilli Joseph A.. 2024. Structural basis for promiscuity in ligand recognition by yjdF riboswitch Cell Discovery |
| Equivalence Class |
NR_all_66812.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | CTI |
| Residue | . / 202 |
| Chain | H / N |
| Non-redundant | True |
| Interacting RNA chains | A/N |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/N: riboswitch |
| RNA family global | riboswitch |
| Volume | 811.88 Å3 |
| Hydrophobicity | 0.787 |
| Hydrophilicity | 1.071 |
| Buriedness | 0.780 |
| Don/acc character | 1.477 |
| SiteScore | 1.055 |
| D Score | 1.059 |
| Kd | — |
| Compound | CTI |
| Residue | . / 205 |
| Chain | M / R |
| Non-redundant | True |
| Interacting RNA chains | B/R |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/R: riboswitch |
| RNA family global | riboswitch |
| Volume | 665.08 Å3 |
| Hydrophobicity | 0.741 |
| Hydrophilicity | 0.957 |
| Buriedness | 0.721 |
| Don/acc character | 1.664 |
| SiteScore | 1.032 |
| D Score | 1.061 |
| Kd | — |