Complex 8vy1
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.10 |
| System mass | 37.57 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8vy1 |
| Reference | Yang Mo, Prestwood Peri R., Passalacqua Luiz F. M., Balaratnam Sumirtha, Fullenkamp Christopher R., Arney J. Winston, Weeks Kevin M., Ferre-D’Amare Adrian, Schneekloth John S.. . Structure-informed design of an ultrabright RNA-activated fluorophore Nature Chemistry |
| Equivalence Class |
NR_all_82829.3
BGSU version: 4.48 |
| Compound | A1AEF |
| Residue | . / 106 |
| Chain | I / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 370.10 Å3 |
| Hydrophobicity | 0.678 |
| Hydrophilicity | 0.677 |
| Buriedness | 0.637 |
| Don/acc character | 3.382 |
| SiteScore | 1.179 |
| D Score | 1.101 |
| Kd | — |
| Compound | A1AEF |
| Residue | . / 103 |
| Chain | L / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 385.19 Å3 |
| Hydrophobicity | 0.690 |
| Hydrophilicity | 0.731 |
| Buriedness | 0.625 |
| Don/acc character | 3.582 |
| SiteScore | 1.161 |
| D Score | 1.076 |
| Kd | — |
| Compound | A1AEF |
| Residue | . / 104 |
| Chain | P / C |
| Non-redundant | False |
| Interacting RNA chains | C/C |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/C: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |