HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8syl

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2232.54 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 6
Organism Escherichia
RCSB PDB Entry 8syl
Reference Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications

Compound AKN
Residue . / 3099
Chain YE / a
Non-redundant True
Interacting RNA chains A/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound AKN
Residue . / 3360
Chain ZS / A
Non-redundant True
Interacting RNA chains Z/A, W/x
Volume 547.43 Å3
Hydrophobicity 0.100
Hydrophilicity 1.134
Buriedness 0.683
Don/acc character 0.825
SiteScore 0.990
D Score 0.980