Complex 8syl
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 2232.55 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 8syl |
| Reference | Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications |
| Equivalence Class |
NR_all_35542.165,
NR_all_83717.185,
NR_all_56726.170
BGSU version: 4.48 |
| Compound | AKN |
| Residue | . / 3099 |
| Chain | YE / a |
| Non-redundant | True |
| Interacting RNA chains | A/a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/a: rRNA |
| RNA family global | rRNA |
| Volume | 288.12 Å3 |
| Hydrophobicity | 0.078 |
| Hydrophilicity | 1.204 |
| Buriedness | 0.700 |
| Don/acc character | 1.599 |
| SiteScore | 0.916 |
| D Score | 0.858 |
| Kd | — |
| Compound | AKN |
| Residue | . / 3360 |
| Chain | ZS / A |
| Non-redundant | True |
| Interacting RNA chains | W/x, Z/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | W/x: tRNA, Z/A: rRNA |
| RNA family global | multiple |
| Volume | 589.96 Å3 |
| Hydrophobicity | 0.101 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.690 |
| Don/acc character | 0.679 |
| SiteScore | 1.144 |
| D Score | 0.905 |
| Kd | — |