HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8syl

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2232.54 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 6
Organism Escherichia
RCSB PDB Entry 8syl
Reference Seely Savannah M., Parajuli Narayan P., De Tarafder Arindam, Ge Xueliang, Sanyal Suparna, Gagnon Matthieu G.. . Molecular basis of the pleiotropic effects by the antibiotic amikacin on the ribosome Nature Communications

Compound AKN
Residue . / 3099
Chain YE / a
Non-redundant True
Interacting RNA chains A/a
Volume 325.85 Å3
Hydrophobicity 0.102
Hydrophilicity 1.205
Buriedness 0.680
Don/acc character 2.546
SiteScore 0.798
D Score 0.712

Compound AKN
Residue . / 3360
Chain ZS / A
Non-redundant True
Interacting RNA chains W/x, Z/A
Volume 563.21 Å3
Hydrophobicity 0.066
Hydrophilicity 1.109
Buriedness 0.685
Don/acc character 1.132
SiteScore 0.991
D Score 0.989