Complex 8u5p
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.90 |
| System mass | 37.02 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8u5p |
| Reference | Lu Xiaocen, Passalacqua Luiz F M, Nodwell Matthew, Kong Kristen Y S, Caballero-García Guillermo, Dolgosheina Elena V, Ferré-D’Amaré Adrian R, Britton Robert, Unrau Peter J. . Symmetry breaking of fluorophore binding to a G-quadruplex generates an RNA aptamer with picomolar KD Nucleic Acids Research |
| Equivalence Class |
NR_all_82829.3
BGSU version: 4.48 |
| Compound | VKI |
| Residue | . / 104 |
| Chain | G / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 415.37 Å3 |
| Hydrophobicity | 0.731 |
| Hydrophilicity | 0.612 |
| Buriedness | 0.619 |
| Don/acc character | 4.801 |
| SiteScore | 1.180 |
| D Score | 1.112 |
| Kd | — |