Complex 8uta
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.05 |
| System mass | 179.17 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Ruminococcus |
| RCSB PDB Entry | 8uta |
| Reference | Krochmal Daniel, Roman Christina, Lewicka Anna, Shao Yaming, Piccirilli Joseph A.. 2024. Structural basis for promiscuity in ligand recognition by yjdF riboswitch Cell Discovery |
| Equivalence Class |
NR_all_66812.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PRL |
| Residue | . / 204 |
| Chain | J / N |
| Non-redundant | True |
| Interacting RNA chains | A/N |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/N: riboswitch |
| RNA family global | riboswitch |
| Volume | 675.37 Å3 |
| Hydrophobicity | 0.851 |
| Hydrophilicity | 1.118 |
| Buriedness | 0.802 |
| Don/acc character | 1.530 |
| SiteScore | 1.070 |
| D Score | 1.057 |
| Kd | — |
| Compound | PRL |
| Residue | . / 204 |
| Chain | N / R |
| Non-redundant | True |
| Interacting RNA chains | B/R |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/R: riboswitch |
| RNA family global | riboswitch |
| Volume | 541.25 Å3 |
| Hydrophobicity | 0.986 |
| Hydrophilicity | 0.887 |
| Buriedness | 0.743 |
| Don/acc character | 1.935 |
| SiteScore | 1.060 |
| D Score | 1.096 |
| Kd | — |