HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8uta

System information

Experimental technique X-ray
Experimental resolution 3.05
System mass 179.17 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Ruminococcus
RCSB PDB Entry 8uta
Reference Krochmal Daniel, Roman Christina, Lewicka Anna, Shao Yaming, Piccirilli Joseph A.. . Structural basis for promiscuity in ligand recognition by yjdF riboswitch Cell Discovery

Compound PRL
Residue . / 204
Chain J / N
Non-redundant True
Interacting RNA chains A/N
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/N: riboswitch
RNA family global riboswitch
Volume 675.37 Å3
Hydrophobicity 0.851
Hydrophilicity 1.118
Buriedness 0.802
Don/acc character 1.530
SiteScore 1.070
D Score 1.057
Kd

Compound PRL
Residue . / 204
Chain N / R
Non-redundant True
Interacting RNA chains B/R
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/R: riboswitch
RNA family global riboswitch
Volume 541.25 Å3
Hydrophobicity 0.986
Hydrophilicity 0.887
Buriedness 0.743
Don/acc character 1.935
SiteScore 1.060
D Score 1.096
Kd