Complex 8vvq
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.70 |
| System mass | 3560.76 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Bos |
| RCSB PDB Entry | 8vvq |
| Equivalence Class |
NR_all_06650.50,
NR_all_45392.2,
NR_all_47611.2,
NR_all_44051.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 101 |
| Chain | ZC / UA |
| Non-redundant | True |
| Interacting RNA chains | TA/UA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/UA: tRNA |
| RNA family global | tRNA |
| Volume | 325.51 Å3 |
| Hydrophobicity | 0.616 |
| Hydrophilicity | 1.074 |
| Buriedness | 0.769 |
| Don/acc character | 1.432 |
| SiteScore | 0.828 |
| D Score | 0.770 |
| Kd | — |
| Compound | ANM |
| Residue | . / 5275 |
| Chain | SJ / WA |
| Non-redundant | True |
| Interacting RNA chains | VA/WA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | VA/WA: rRNA |
| RNA family global | rRNA |
| Volume | 677.77 Å3 |
| Hydrophobicity | 0.423 |
| Hydrophilicity | 1.284 |
| Buriedness | 0.831 |
| Don/acc character | 1.237 |
| SiteScore | 1.239 |
| D Score | 1.020 |
| Kd | — |