HARIBOSS - RNA-SM complexes list

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

SM: ARG ARG

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

SM: ARG ARG

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

SM: ARG ARG

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

SM: ARG ARG CLM CLM

7rqe

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

SM: ARG ARG CLM CLM

7rwr

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An RNA aptamer that decreases flavin redox potential

SM: FMN

7ryf

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A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

SM: 80P 80P 80P

7ryg

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A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

SM: 80P 80P 80P

7ryh

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A. baumannii Ribosome-TP-6076 complex: Empty 70S

SM: 80P 80P 80P

7s1g

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wild-type Escherichia coli stalled ribosome with antibiotic linezolid

SM: ZLD

7s1h

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Wild-type Escherichia coli ribosome with antibiotic linezolid

SM: ZLD

7s1i

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Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

SM: RD8

7s1j

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Wild-type Escherichia coli ribosome with antibiotic radezolid

SM: RD8

7s1k

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Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

SM: RD8

7ssl

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Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

SM: GDP

7st7

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Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

SM: GDP

7szu

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Crystal structure of Pepper RNA aptamer in complex with HBC ligand and Fab BL3-6

SM: J8F

7td7

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Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions

SM: VIB

7tda

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Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions

SM: TPP

7tdb

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Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions

SM: GMI

7tdc

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Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions

SM: GMI

7tql

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CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

SM: 5GP

7tuv

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Crystal structure of the exoribonucleolytic module of T. brucei RRP44

SM: U5P

7tzr

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Crystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)

SM: KWU KWU

7tzt

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Crystal structure of the E. coli thiM riboswitch in complex with N1,N1-dimethyl-N2-(quinoxalin-6-ylmethyl)ethane-1,2-diamine (linked compound 37)

SM: KXC

7tzu

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Crystal structure of the E. coli thiM riboswitch bound to 1-(4-(piperazin-1-yl)pyridin-3-yl)-N-(quinoxalin-6-ylmethyl)methanamine (linked compound 38)

SM: KWL

7u0y

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Crystal structure of Pepper RNA aptamer in complex with HBC599 ligand and Fab BL3-6

SM: KY6

7u2a

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Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)

SM: SSA

7u2b

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Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL)

SM: SSA

7u2i

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

SM: CLM CLM

7u2j

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

SM: CLM CLM

7u87

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Product of 13mer primer with activated G monomer diastereomer 1

SM: LXI LXI

7u88

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Product of 13mer primer with activated G monomer diastereomer 2

SM: LXI LXI

7u89

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Product of 14mer primer with activated G monomer diastereomer 1

SM: LXI LXI

7u8a

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Product of 14mer primer with activated G monomer diastereomer 2

SM: LXI LXI

7u8b

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Product of 14mer primer with activated asymmetric GA dimer diastereomer 1

SM: LXR

7ucj

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Mammalian 80S translation initiation complex with mRNA and Harringtonine

SM: MQ6

7uck

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80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

SM: MQ6

7ug6

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Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922

SM: GDP

7uo4

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SARS-CoV-2 replication-transcription complex bound to Remdesivir triphosphate, in a pre-catalytic state

SM: NWX

7uo7

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SARS-CoV-2 replication-transcription complex bound to ATP, in a pre-catalytic state

SM: ATP

7uo9

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SARS-CoV-2 replication-transcription complex bound to UTP, in a pre-catalytic state

SM: UTP

7uob

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SARS-CoV-2 replication-transcription complex bound to GTP, in a pre-catalytic state

SM: GTP

7uoe

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SARS-CoV-2 replication-transcription complex bound to CTP, in a pre-catalytic state

SM: CTP

7uoo

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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

SM: B3P B3P B3P GTP

7uqb

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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

SM: B3P B3P B3P GDP

7uqz

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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

SM: B3P B3P B3P GDP

7uvv

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A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

SM: OI9 OI9

7uvx

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A. baumannii 70S ribosome-Streptothricin-F complex

SM: OI9

7uvy

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A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA

SM: OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY

7uvz

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A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

SM: OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY

7uw1

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A. baumannii 70S ribosome-Streptothricin-D complex

SM: OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY OIY

7v08

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Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

SM: B3P B3P B3P GDP

7w9s

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Crystal structure of the enterovirus 71 polymerase elongation complex (C1S3 form)

SM: CTP

7wi9

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The THF-II riboswitch bound to THF and soaking with SeUrea

SM: THG

7wib

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The THF-II riboswitch bound to THF

SM: THG

7wif

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The THF-II riboswitch bound to H4B

SM: H4B

7wii

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The THF-II riboswitch bound to NPR

SM: NPR

7xd9

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Crystal Structure of Dengue Virus serotype 2 (DENV2) Polymerase Elongation Complex (CTP Form)

SM: CTP CTP CTP CTP CTP CTP

7xpl

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Crystal structure of a C/D-free RNA-guided RNA 2'-O-methyltransferase

SM: SAH SAH