Complex 7uvy
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.39 |
| System mass | 2169.99 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Acinetobacter |
| RCSB PDB Entry | 7uvy |
| Reference | Morgan Christopher E., Kang Yoon-Suk, Green Alex B., Smith Kenneth P., Dowgiallo Matthew G., Miller Brandon C., Chiaraviglio Lucius, Truelson Katherine A., Zulauf Katelyn E., Rodriguez Shade, Kang Anthony D., Manetsch Roman, Yu Edward W., Kirby James E.. . Streptothricin F is a bactericidal antibiotic effective against highly drug-resistant gram-negative bacteria that interacts with the 30S subunit of the 70S ribosome PLOS Biology |
| Equivalence Class |
NR_all_43481.6,
NR_all_67384.5,
NR_all_96169.5
BGSU version: 4.48 |
| Compound | OIY |
| Residue | . / 3001 |
| Chain | CB / A |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | OIY |
| Residue | . / 3002 |
| Chain | DB / A |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | 221.58 Å3 |
| Hydrophobicity | 0.046 |
| Hydrophilicity | 1.038 |
| Buriedness | 0.634 |
| Don/acc character | 1.612 |
| SiteScore | 0.769 |
| D Score | 0.740 |
| Kd | — |
| Compound | OIY |
| Residue | . / 3003 |
| Chain | EB / A |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | 467.85 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 0.943 |
| Buriedness | 0.668 |
| Don/acc character | 3.233 |
| SiteScore | 1.083 |
| D Score | 0.950 |
| Kd | — |
| Compound | OIY |
| Residue | . / 3004 |
| Chain | FB / A |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | 181.45 Å3 |
| Hydrophobicity | 0.151 |
| Hydrophilicity | 1.053 |
| Buriedness | 0.707 |
| Don/acc character | 1.732 |
| SiteScore | 0.774 |
| D Score | 0.532 |
| Kd | — |
| Compound | OIY |
| Residue | . / 3005 |
| Chain | GB / A |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | 133.77 Å3 |
| Hydrophobicity | 0.028 |
| Hydrophilicity | 0.828 |
| Buriedness | 0.626 |
| Don/acc character | 3.162 |
| SiteScore | 0.798 |
| D Score | 0.603 |
| Kd | — |
| Compound | OIY |
| Residue | . / 3006 |
| Chain | HB / A |
| Non-redundant | True |
| Interacting RNA chains | EA/a, E/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/A: rRNA, EA/a: rRNA |
| RNA family global | rRNA |
| Volume | 236.33 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.509 |
| Buriedness | 0.733 |
| Don/acc character | 1.197 |
| SiteScore | 0.798 |
| D Score | 0.599 |
| Kd | — |
| Compound | OIY |
| Residue | . / 201 |
| Chain | JB / N |
| Non-redundant | True |
| Interacting RNA chains | F/B, E/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/A: rRNA, F/B: rRNA |
| RNA family global | rRNA |
| Volume | 120.74 Å3 |
| Hydrophobicity | 0.120 |
| Hydrophilicity | 0.881 |
| Buriedness | 0.666 |
| Don/acc character | 2.266 |
| SiteScore | 0.636 |
| D Score | 0.573 |
| Kd | — |
| Compound | OIY |
| Residue | . / 101 |
| Chain | KB / W |
| Non-redundant | True |
| Interacting RNA chains | E/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/A: rRNA |
| RNA family global | rRNA |
| Volume | 617.06 Å3 |
| Hydrophobicity | 0.188 |
| Hydrophilicity | 1.046 |
| Buriedness | 0.728 |
| Don/acc character | 1.229 |
| SiteScore | 1.113 |
| D Score | 0.963 |
| Kd | — |
| Compound | OIY |
| Residue | . / 1601 |
| Chain | LB / a |
| Non-redundant | True |
| Interacting RNA chains | EA/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EA/a: rRNA |
| RNA family global | rRNA |
| Volume | 247.99 Å3 |
| Hydrophobicity | 0.135 |
| Hydrophilicity | 1.087 |
| Buriedness | 0.698 |
| Don/acc character | 1.481 |
| SiteScore | 0.972 |
| D Score | 0.702 |
| Kd | — |
| Compound | OIY |
| Residue | . / 1602 |
| Chain | MB / a |
| Non-redundant | True |
| Interacting RNA chains | EA/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EA/a: rRNA |
| RNA family global | rRNA |
| Volume | 514.16 Å3 |
| Hydrophobicity | 0.094 |
| Hydrophilicity | 1.112 |
| Buriedness | 0.698 |
| Don/acc character | 1.649 |
| SiteScore | 1.139 |
| D Score | 0.982 |
| Kd | — |
| Compound | OIY |
| Residue | . / 1603 |
| Chain | NB / a |
| Non-redundant | True |
| Interacting RNA chains | EA/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EA/a: rRNA |
| RNA family global | rRNA |
| Volume | 152.29 Å3 |
| Hydrophobicity | 0.271 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.704 |
| Don/acc character | 1.131 |
| SiteScore | 0.725 |
| D Score | 0.485 |
| Kd | — |
| Compound | OIY |
| Residue | . / 1604 |
| Chain | OB / a |
| Non-redundant | True |
| Interacting RNA chains | EA/a |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | EA/a: rRNA |
| RNA family global | rRNA |
| Volume | 247.99 Å3 |
| Hydrophobicity | 0.129 |
| Hydrophilicity | 0.905 |
| Buriedness | 0.643 |
| Don/acc character | 1.646 |
| SiteScore | 0.846 |
| D Score | 0.655 |
| Kd | — |