Complex 7xpl
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.21 |
| System mass | 167.58 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 7xpl |
| Reference | Wang Jiayin, Yang Zuxiao, Ye Keqiong. 2022. Methylation guide RNAs without box C/D motifs RNA |
| Equivalence Class |
NR_all_64498.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAH |
| Residue | . / 301 |
| Chain | I / E |
| Non-redundant | True |
| Interacting RNA chains | G/I, E/G |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/G: unknown, G/I: unknown |
| RNA family global | unknown |
| Volume | 263.42 Å3 |
| Hydrophobicity | 0.907 |
| Hydrophilicity | 1.396 |
| Buriedness | 0.959 |
| Don/acc character | 0.843 |
| SiteScore | 1.175 |
| D Score | 1.060 |
| Kd | — |
| Compound | SAH |
| Residue | . / 301 |
| Chain | J / F |
| Non-redundant | True |
| Interacting RNA chains | F/H, H/J |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | F/H: unknown, H/J: unknown |
| RNA family global | unknown |
| Volume | 324.14 Å3 |
| Hydrophobicity | 0.727 |
| Hydrophilicity | 1.385 |
| Buriedness | 0.934 |
| Don/acc character | 0.760 |
| SiteScore | 1.158 |
| D Score | 1.049 |
| Kd | — |