HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7uoo

System information

Experimental technique Electron Microscopy
Experimental resolution 2.34
System mass 2682.06 kDa
Deposition year 2022
Molecule type RNA/Protein
# RNA entities 1
Organism Saccharomyces
RCSB PDB Entry 7uoo
Reference Sekulski Kamil, Cruz Victor Emmanuel, Weirich Christine S., Erzberger Jan P.. . rRNA methylation by Spb1 regulates the GTPase activity of Nog2 during 60S ribosomal subunit assembly Nature Communications

Compound B3P
Residue . / 3478
Chain HE / 1
Non-redundant True
Interacting RNA chains B/1
Volume 643.13 Å3
Hydrophobicity 0.206
Hydrophilicity 1.189
Buriedness 0.755
Don/acc character 1.055
SiteScore 1.188
D Score 1.005

Compound B3P
Residue . / 3479
Chain IE / 1
Non-redundant True
Interacting RNA chains B/1
Volume 742.25 Å3
Hydrophobicity 0.026
Hydrophilicity 1.619
Buriedness 0.761
Don/acc character 1.056
SiteScore 1.042
D Score 0.868

Compound B3P
Residue . / 3480
Chain JE / 1
Non-redundant True
Interacting RNA chains B/1
Volume 287.78 Å3
Hydrophobicity 0.275
Hydrophilicity 1.423
Buriedness 0.829
Don/acc character 0.698
SiteScore 0.801
D Score 0.606

Compound GTP
Residue . / 501
Chain RE / m
Non-redundant True
Interacting RNA chains B/1
Volume 651.01 Å3
Hydrophobicity 0.355
Hydrophilicity 1.454
Buriedness 0.844
Don/acc character 0.847
SiteScore 1.098
D Score 0.973