Complex 7rqd
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 4432.41 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 7rqd |
| Reference | Syroegin Egor A., Flemmich Laurin, Klepacki Dorota, Vazquez-Laslop Nora, Micura Ronald, Polikanov Yury S.. . Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 4023 |
| Chain | QQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | ARG |
| Residue | . / 232 |
| Chain | XRA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 182.48 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.889 |
| Buriedness | 0.572 |
| Don/acc character | 0.794 |
| SiteScore | 1.012 |
| D Score | 0.599 |
| Kd | — |
| Compound | CLM |
| Residue | . / 4022 |
| Chain | PQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | CLM |
| Residue | . / 3727 |
| Chain | UKC / 2A |
| Non-redundant | True |
| Interacting RNA chains | EB/2A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | EB/2A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |