Harnessing RIBOnucleic acid - Small molecules Structures
Combine filters to refine your query. Each filter opens a dialog showing the values available in the data.
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T with iridium (III) ions
SM: 2ZY
Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe
SM: J0C
Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
SM: SAM
Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)
SM: GET GET
Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
RNA duplex containing CC mispairs
SM: SPM
Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak
SM: GTP
Crystal structure of the Pepper aptamer in complex with HBC, iridium hexammine soak
SM: J8F
Crystal structure of the Pepper aptamer in complex with HBC
Interaction between a fluoroquinolone derivative and RNAs with a single bulge
SM: 53D
High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
SM: GP3 GP3
LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Crystal structure of Squash RNA aptamer in complex with DFHBI-1T
SM: 747
Spinach variant bound to DFHBI-1T
SM: 2ZY SPM SPM SPM
ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Crystal structure of r(GU)11G-NMM complex
SM: MMP
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium hexammine co-crystallized form)
SM: V5Z V5Z
Crystal structure of Chili RNA aptamer in complex with DMHBO+ (Iridium III hexammine soaking crystal form)
SM: GTP V5Z V5Z V5Z V5Z
Crystal structure of the Chili RNA aptamer in complex with DMHBI+
SM: GTP GTP SPM V6T V6T V6T V6T
Crystal structure of the Chili RNA aptamer in complex with DMHBO+
SM: SPM SPM SPM SPM V5Z V5Z V5Z V5Z
PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites
SM: PRF PRF PRF PRF PRF PRF
An RNA aptamer that decreases flavin redox potential
SM: FMN
Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions
SM: VIB
Crystal structure of the E. coli thiM riboswitch in complex with thiamine pyrophosphate, manganese ions
SM: TPP
Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions
SM: GMI
Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions
Crystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)
SM: KWU KWU
Crystal structure of the E. coli thiM riboswitch in complex with N1,N1-dimethyl-N2-(quinoxalin-6-ylmethyl)ethane-1,2-diamine (linked compound 37)
SM: KXC
Crystal structure of the E. coli thiM riboswitch bound to 1-(4-(piperazin-1-yl)pyridin-3-yl)-N-(quinoxalin-6-ylmethyl)methanamine (linked compound 38)
SM: KWL
Product of 13mer primer with activated G monomer diastereomer 1
SM: LXI LXI
Product of 13mer primer with activated G monomer diastereomer 2
Product of 14mer primer with activated G monomer diastereomer 1
Product of 14mer primer with activated G monomer diastereomer 2
Product of 14mer primer with activated asymmetric GA dimer diastereomer 1
SM: LXR
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing
Cryo-EM structure of Tetrahymena ribozyme conformation 3 undergoing the first-step self-splicing
The THF-II riboswitch bound to THF and soaking with SeUrea
SM: THG
The THF-II riboswitch bound to THF
The THF-II riboswitch bound to H4B
SM: H4B
The THF-II riboswitch bound to NPR
SM: NPR
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing
Ligand bound state of a brocolli-pepper aptamer FRET tile
SM: 1TU J93
Solution structure of the RNA helix formed by the 5'-end of U1 snRNA and an A-1 bulged 5'-splice site in complex with SMN-CY
SM: ULR
Crystal structure of theophylline aptamer in complex with theophylline
SM: TEP TEP
Crystal structure of theophylline aptamer in complex with TAL3
SM: QB3 QB3
Crystal structure of theophylline aptamer in complex with TAL2
SM: QAX QAX
Crystal structure of theophylline aptamer in complex with TAL1
SM: QIJ QIJ QIJ QIJ
Crystal structure of theophylline aptamer in complex with TAL4
SM: QEU QEU
Structure of Beetroot dimer bound to DFAME
SM: X5R X5R
Structure of Beetroot dimer bound to DFHO
SM: 747 747
Beetroot dimer bound to ThT
SM: TFX TFX
Wobble Beetroot (A16U-U38G) dimer bound to DFHO
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8