Complex 7zj4
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 4.43 |
| System mass | 121.36 kDa |
| Deposition year | 2022 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 7zj4 |
| Equivalence Class |
NR_all_13632.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 1TU |
| Residue | . / 402 |
| Chain | C / E |
| Non-redundant | True |
| Interacting RNA chains | A/E |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/E: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 328.59 Å3 |
| Hydrophobicity | 0.648 |
| Hydrophilicity | 0.857 |
| Buriedness | 0.674 |
| Don/acc character | 2.487 |
| SiteScore | 1.169 |
| D Score | 1.065 |
| Kd | — |
| Compound | J93 |
| Residue | . / 401 |
| Chain | B / E |
| Non-redundant | True |
| Interacting RNA chains | A/E |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/E: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 195.51 Å3 |
| Hydrophobicity | 1.029 |
| Hydrophilicity | 0.754 |
| Buriedness | 0.638 |
| Don/acc character | 1.581 |
| SiteScore | 1.158 |
| D Score | 1.067 |
| Kd | — |