Complex 8asd
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.60 |
| System mass | 265.75 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Bandavirus |
| RCSB PDB Entry | 8asd |
| Reference | Williams Harry M, Thorkelsson Sigurdur R, Vogel Dominik, Milewski Morlin, Busch Carola, Cusack Stephen, Grünewald Kay, Quemin Emmanuelle R J, Rosenthal Maria. 2023. Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein Nucleic Acids Research |
| Equivalence Class |
NR_all_42699.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 2KH |
| Residue | . / 2104 |
| Chain | I / A |
| Non-redundant | False |
| Interacting RNA chains | B/T, C/G |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | B/T: unknown, C/G: unknown |
| RNA family global | unknown |
| Volume | 784.78 Å3 |
| Hydrophobicity | 0.240 |
| Hydrophilicity | 1.626 |
| Buriedness | 0.856 |
| Don/acc character | 0.576 |
| SiteScore | 1.106 |
| D Score | 0.924 |
| Kd | — |