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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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Experimental technique Experimental resolution Molecular weight (kDa) Deposition date Molecule type Organism
Molecular weight (Da) Number of atoms
Number of interacting chains Pocket size SiteScore Dscore Exposure Enclosure Hydrophobicity Hydrophilicity Donor/Acceptor Volume RNA environment global RNA environment detailed RNA family global RNA family chains Only one non-redundant filter can be selected at a time
70 RNA-SM complexes found
60 120 180
filters used:  RNA family global: ribozyme  
Structure of complex 8run

8run

Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+, and ARN25850

SM: EPE EPE VTR

Structure of complex 8t5o

8t5o

Cryo-EM structure of RNA device 43, holo state

SM: TAC

Structure of complex 9c6k

9c6k

Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate

SM: TPP

Structure of complex 9fn2

9fn2

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystallized with SAM

SM: SAH SAH

Structure of complex 9fn3

9fn3

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystalized with ProSeDMA

SM: A1IY6 A1IY6

Structure of complex 9j9x

9j9x

Tetrahymena Ribozyme L-16 complex with small molecule inhibitor ZPT-084

SM: A1EA7

Structure of complex 9mqs

9mqs

CryoEM Structure of the Candida albicans Group I Intron-GMP Complex

SM: 5GP

Structure of complex 9mqt

9mqt

CryoEM Structure of the Candida albicans Group I Intron-Compound 11 Complex under Magnesium Condition

SM: A1BNU

Structure of complex 9mqu

9mqu

CryoEM Structure of the Candida albicans Group I Intron-Compound 11 Complex under Calcium Condition

SM: A1BNU

Structure of complex 9x21

9x21

Tetrahymena Ribozyme scaffolded SicX sRNA in complex with C-di-GMP

SM: C2E