HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cf8

System information

Experimental technique Electron Microscopy
Experimental resolution 2.20
System mass 635.70 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8cf8
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology
Equivalence Class NR_all_56726.170
BGSU version: 4.48

Compound YQM
Residue . / 1601
Chain J / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/A: rRNA
RNA family global rRNA
Volume 148.18 Å3
Hydrophobicity 0.276
Hydrophilicity 1.190
Buriedness 0.756
Don/acc character 1.574
SiteScore 0.907
D Score 0.645
Kd