HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5wfs

System information

Experimental technique Electron Microscopy
Experimental resolution 3.00
System mass 2297.55 kDa
Deposition year 2017
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 5wfs
Reference Fislage Marcus, Zhang Jingji, Brown Zuben Patrick, Mandava Chandra Sekhar, Sanyal Suparna, Ehrenberg Måns, Frank Joachim. . Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A Nucleic Acids Research

Compound FME
Residue . / 3001
Chain HB / A
Non-redundant True
Interacting RNA chains A/A
Volume 555.66 Å3
Hydrophobicity 0.234
Hydrophilicity 1.274
Buriedness 0.729
Don/acc character 1.416
SiteScore 1.171
D Score 0.962

Compound GTP
Residue . / 402
Chain DGB / z
Non-redundant True
Interacting RNA chains A/A
Volume 603.68 Å3
Hydrophobicity 0.144
Hydrophilicity 1.598
Buriedness 0.763
Don/acc character 0.927
SiteScore 1.043
D Score 0.877

Compound PHE
Residue . / 401
Chain CGB / z
Non-redundant True
Interacting RNA chains FB/y
Volume 414.34 Å3
Hydrophobicity 0.411
Hydrophilicity 1.416
Buriedness 0.893
Don/acc character 0.926
SiteScore 1.130
D Score 1.014