HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compounds
RNA-SM complexes
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compounds

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System Properties

Experimental technique Experimental resolution Molecular weight Deposition date Molecule type Organism

Ligand Properties

Molecular weight Number of atoms Number of PDB entries Lipinski rule of 5 Veber Pfizer 3/75

Pocket Properties

Number of interacting chains Pocket size SiteScore Dscore Exposure Enclosure Hydrophobicity Hydrophilicity Donor/Acceptor Volume Non-redundant only

326 compounds found

compounds per page

60 120 180

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PDB Ligand ID (ascending) PDB Ligand ID (descending) Molecular weight (ascending) Molecular weight (descending) lipinski ok (ascending) lipinski ok (descending) Veber ok (ascending) Veber ok (descending) Pfizer ok (ascending) Pfizer ok (descending)

Select this compound

Molecular weight: 487.20 g/mol

Select this compound

Molecular weight: 804.45 g/mol

Select this compound

Molecular weight: 429.17 g/mol

Select this compound

Molecular weight: 265.11 g/mol

Select this compound

Molecular weight: 531.27 g/mol

Select this compound

Molecular weight: 525.25 g/mol

Select this compound

Molecular weight: 411.15 g/mol

Select this compound

Molecular weight: 855.36 g/mol

Select this compound

Molecular weight: 855.36 g/mol

Select this compound

Molecular weight: 410.15 g/mol

Select this compound

Molecular weight: 565.97 g/mol

Select this compound

Molecular weight: 430.22 g/mol

Select this compound

Molecular weight: 763.33 g/mol

Select this compound

Molecular weight: 548.23 g/mol

Select this compound

Molecular weight: 758.51 g/mol

Select this compound

Molecular weight: 322.08 g/mol

Select this compound

Molecular weight: 322.19 g/mol

Select this compound

Molecular weight: 393.22 g/mol

Select this compound

Molecular weight: 402.47 g/mol

Select this compound

Molecular weight: 376.18 g/mol

Select this compound

Molecular weight: 378.12 g/mol

Select this compound

Molecular weight: 315.15 g/mol

Select this compound

Molecular weight: 558.21 g/mol

Select this compound

Molecular weight: 464.21 g/mol

Select this compound

Molecular weight: 408.11 g/mol

Select this compound

Molecular weight: 337.14 g/mol

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Experimental method

Electron Microscopy

Solution NMR

X-ray

Experimental resolution

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Molecular Weight

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Deposition date

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Molecular composition of the system

RNA

RNA/DNA

RNA/DNA/Protein

RNA/Protein

Source organism

Acidobacterium

Acinetobacter

Alpharetrovirus

Arabidopsis

Bacillus

Bifidobacterium

Caldanaerobacter

Candida

Candidatus Korobacter

Candidatus Pelagibacter

Clostridium

Cutibacterium

Deinococcus

Didymium

Enterovirus

Escherichia

Faecalibacterium

Fusobacterium

Geobacter

Gloeobacter

Haloarcula

Hepacivirus

Homo

Ideonella

Lacticaseibacillus

Lactococcus

Leishmania

Lentivirus

Listeria

Mesoplasma

Mesorhizobium

Mus

Mycobacterium

Mycolicibacterium

Mycoplasmoides

Nicotiana

Oceanobacillus

Oryctolagus

Pseudomonas

Pylaiella

Pyrobaculum

Ralstonia

Roseobacter

Ruminococcus

Saccharolobus

Saccharomyces

Schaalia

Staphylococcus

Streptococcus

Streptomyces

Sulfobacillus

Sus

Syntrophothermus

Tequatrovirus

Tetrahymena

Thermoanaerobacter

Thermotoga

Thermovirga

Thermus

Tymovirus

Varicellovirus

Vibrio

Molecular weight

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Number of atoms

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Number of PDB entries

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Number of interacting chains

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Pocket size

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SiteScore

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Dscore

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Exposure

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Enclosure

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Hydrophobicity

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Hydrophilicity

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Donor/Acceptor

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Volume

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