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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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Experimental technique Experimental resolution Molecular weight (kDa) Deposition date Molecule type Organism
Molecular weight (Da) Number of atoms
Number of interacting chains Pocket size SiteScore Dscore Exposure Enclosure Hydrophobicity Hydrophilicity Donor/Acceptor Volume RNA environment global RNA environment detailed RNA family global RNA family chains Only one non-redundant filter can be selected at a time
964 RNA-SM complexes found
60 120 180
filters used:  RNA family global: rRNA  
Structure of complex 9vxm

9vxm

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

SM: NAD NMY NMY NMY NMY NMY NMY NMY NMY SPM

Structure of complex 9vxn

9vxn

Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs

SM: NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY

Structure of complex 9ww7

9ww7

human 80S ribosome delta eL41 rotated state

SM: M7G

Structure of complex 9ydb

9ydb

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

SM: 3HE