Complex 9vxm
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 2953.06 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9vxm |
| Equivalence Class |
NR_all_12763.37,
NR_all_93855.32
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | NAD |
| Residue | . / 1701 |
| Chain | RJ / AA |
| Non-redundant | True |
| Interacting RNA chains | TA/AA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 3470 |
| Chain | ZI / A |
| Non-redundant | True |
| Interacting RNA chains | K/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | K/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 3471 |
| Chain | AJ / A |
| Non-redundant | True |
| Interacting RNA chains | K/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | K/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 3473 |
| Chain | CJ / A |
| Non-redundant | True |
| Interacting RNA chains | K/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | K/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 3474 |
| Chain | DJ / A |
| Non-redundant | True |
| Interacting RNA chains | K/A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | K/A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 1783 |
| Chain | VM / AA |
| Non-redundant | True |
| Interacting RNA chains | TA/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | TA/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 1784 |
| Chain | WM / AA |
| Non-redundant | True |
| Interacting RNA chains | TA/AA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 1785 |
| Chain | XM / AA |
| Non-redundant | True |
| Interacting RNA chains | YB/Az, TA/AA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/AA: rRNA, YB/Az: mRNA |
| RNA family global | multiple |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | NMY |
| Residue | . / 1786 |
| Chain | YM / AA |
| Non-redundant | True |
| Interacting RNA chains | TA/AA, K/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | K/A: rRNA, TA/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | SPM |
| Residue | . / 1702 |
| Chain | SJ / AA |
| Non-redundant | True |
| Interacting RNA chains | TA/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | TA/AA: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |