HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9vxm

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2953.06 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9vxm
Equivalence Class NR_all_12763.36, NR_all_93855.31
BGSU version: 4.49

Compound NAD
Residue . / 1701
Chain RJ / AA
Non-redundant True
Interacting RNA chains TA/AA
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains TA/AA: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 3470
Chain ZI / A
Non-redundant True
Interacting RNA chains K/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains K/A: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 3471
Chain AJ / A
Non-redundant True
Interacting RNA chains K/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains K/A: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 3473
Chain CJ / A
Non-redundant True
Interacting RNA chains K/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains K/A: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 3474
Chain DJ / A
Non-redundant True
Interacting RNA chains K/A
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains K/A: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 1783
Chain VM / AA
Non-redundant True
Interacting RNA chains TA/AA
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains TA/AA: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 1784
Chain WM / AA
Non-redundant True
Interacting RNA chains TA/AA
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains TA/AA: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 1785
Chain XM / AA
Non-redundant True
Interacting RNA chains YB/Az, TA/AA
RNA environment detailled protein
RNA environment global RNA/Protein
RNA family chains TA/AA: rRNA, YB/Az: mRNA
RNA family global multiple
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound NMY
Residue . / 1786
Chain YM / AA
Non-redundant True
Interacting RNA chains TA/AA, K/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains K/A: rRNA, TA/AA: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound SPM
Residue . / 1702
Chain SJ / AA
Non-redundant True
Interacting RNA chains TA/AA
RNA environment detailled ion
RNA environment global RNA
RNA family chains TA/AA: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd