HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 5wfk

System information

Experimental technique Electron Microscopy
Experimental resolution 3.40
System mass 2295.90 kDa
Deposition year 2017
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 5wfk
Reference Fislage Marcus, Zhang Jingji, Brown Zuben Patrick, Mandava Chandra Sekhar, Sanyal Suparna, Ehrenberg Måns, Frank Joachim. . Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A Nucleic Acids Research

Compound FME
Residue . / 3001
Chain HB / A
Non-redundant False
Interacting RNA chains A/A
Volume 525.48 Å3
Hydrophobicity 0.300
Hydrophilicity 1.549
Buriedness 0.753
Don/acc character 0.932
SiteScore 1.187
D Score 0.887

Compound PHE
Residue . / 401
Chain SDB / z
Non-redundant True
Interacting RNA chains FB/y
Volume 447.62 Å3
Hydrophobicity 0.511
Hydrophilicity 1.311
Buriedness 0.865
Don/acc character 0.743
SiteScore 1.111
D Score 1.031