Complex 5wdt
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 2308.00 kDa |
| Deposition year | 2017 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 5wdt |
| Reference | Fislage Marcus, Zhang Jingji, Brown Zuben Patrick, Mandava Chandra Sekhar, Sanyal Suparna, Ehrenberg Måns, Frank Joachim. . Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A Nucleic Acids Research |
| Compound | FME |
| Residue | . / 3001 |
| Chain | HB / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, CB/v |
| Volume | 591.68 Å3 |
| Hydrophobicity | 0.063 |
| Hydrophilicity | 2.064 |
| Buriedness | 0.761 |
| Don/acc character | 0.746 |
| SiteScore | 1.192 |
| D Score | 0.724 |
| Compound | GNP |
| Residue | . / 402 |
| Chain | QWB / z |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| Volume | 614.31 Å3 |
| Hydrophobicity | 0.214 |
| Hydrophilicity | 1.840 |
| Buriedness | 0.791 |
| Don/acc character | 0.619 |
| SiteScore | 1.062 |
| D Score | 0.815 |
| Compound | PHE |
| Residue | . / 401 |
| Chain | PWB / z |
| Non-redundant | True |
| Interacting RNA chains | FB/y |
| Volume | 454.82 Å3 |
| Hydrophobicity | 0.144 |
| Hydrophilicity | 1.433 |
| Buriedness | 0.881 |
| Don/acc character | 0.895 |
| SiteScore | 1.122 |
| D Score | 1.002 |