HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9o2y

System information

Experimental technique Electron Microscopy
Experimental resolution 2.14
System mass 2208.81 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 9o2y
Reference Majumdar Chandrima, Kent Alexandra D., Hamlish Noah X., Zhu Cathy, Fitzgerald Katelyn A., Cate Jamie H.D., Schepartz Alanna. . Co-Translational Incorporation of (R) - and (S)2 -Hydroxy Acids In Vitro : A Structural and Biochemical Study on the E. coli Ribosome Journal of the American Chemical Society
Equivalence Class NR_all_83717.186, NR_all_56726.171
BGSU version: 4.49

Compound PAR
Residue . / 1601
Chain DB / A
Non-redundant False
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: rRNA
RNA family global rRNA
Volume 48.36 Å3
Hydrophobicity 0.094
Hydrophilicity 0.813
Buriedness 0.548
Don/acc character 2.727
SiteScore 0.820
D Score 0.524
Kd

Compound SPM
Residue . / 6216
Chain CN / a
Non-redundant True
Interacting RNA chains X/a
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains X/a: mRNA
RNA family global mRNA
Volume 212.66 Å3
Hydrophobicity 0.148
Hydrophilicity 1.291
Buriedness 0.859
Don/acc character 1.548
SiteScore 1.033
D Score 0.746
Kd