Complex 9o2x
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.29 |
| System mass | 2208.96 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 9o2x |
| Reference | Majumdar Chandrima, Kent Alexandra D., Hamlish Noah X., Zhu Cathy, Fitzgerald Katelyn A., Cate Jamie H.D., Schepartz Alanna. 2026. Co-Translational Incorporation of (R) - and (S) -β 2 -Hydroxy Acids In Vitro : A Structural and Biochemical Study on the E. coli Ribosome Journal of the American Chemical Society |
| Equivalence Class |
NR_all_83717.187,
NR_all_56726.172
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1601 |
| Chain | RB / A |
| Non-redundant | True |
| Interacting RNA chains | ZA/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | ZA/A: rRNA |
| RNA family global | rRNA |
| Volume | 253.48 Å3 |
| Hydrophobicity | 0.108 |
| Hydrophilicity | 0.982 |
| Buriedness | 0.685 |
| Don/acc character | 2.305 |
| SiteScore | 0.832 |
| D Score | 0.813 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3220 |
| Chain | QN / a |
| Non-redundant | True |
| Interacting RNA chains | AB/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | AB/a: rRNA |
| RNA family global | rRNA |
| Volume | 337.17 Å3 |
| Hydrophobicity | 0.213 |
| Hydrophilicity | 1.040 |
| Buriedness | 0.744 |
| Don/acc character | 1.225 |
| SiteScore | 1.016 |
| D Score | 0.835 |
| Kd | — |