HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8xt0

System information

Experimental technique Electron Microscopy
Experimental resolution 3.20
System mass 2888.61 kDa
Deposition year 2024
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8xt0
Reference Li Xiang, Wang Mengjiao, Denk Timo, Buschauer Robert, Li Yi, Beckmann Roland, Cheng Jingdong. . Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline Nature Communications

Compound T1C
Residue . / 1707
Chain HG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 243.19 Å3
Hydrophobicity 0.599
Hydrophilicity 0.814
Buriedness 0.697
Don/acc character 3.481
SiteScore 1.046
D Score 0.905

Compound T1C
Residue . / 1708
Chain IG / L1
Non-redundant True
Interacting RNA chains A/L1
Volume 360.84 Å3
Hydrophobicity 0.456
Hydrophilicity 0.924
Buriedness 0.718
Don/acc character 2.456
SiteScore 1.186
D Score 1.070

Compound T1C
Residue . / 1034
Chain EI / S1
Non-redundant True
Interacting RNA chains EC/S1
Volume 279.55 Å3
Hydrophobicity 0.137
Hydrophilicity 1.024
Buriedness 0.733
Don/acc character 1.989
SiteScore 1.087
D Score 0.931