Complex 6ysi
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.50 |
| System mass | 1387.93 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Acinetobacter |
| RCSB PDB Entry | 6ysi |
| Reference | Nicholson David, Edwards Thomas A., O'Neill Alex J., Ranson Neil A.. 2020. Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics Structure |
| Equivalence Class |
NR_all_67384.5,
NR_all_96169.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | T1C |
| Residue | . / 3160 |
| Chain | JG / 1 |
| Non-redundant | True |
| Interacting RNA chains | AA/1 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | AA/1: rRNA |
| RNA family global | rRNA |
| Volume | 318.30 Å3 |
| Hydrophobicity | 0.406 |
| Hydrophilicity | 0.979 |
| Buriedness | 0.757 |
| Don/acc character | 1.138 |
| SiteScore | 0.720 |
| D Score | 0.650 |
| Kd | — |
| Compound | T1C |
| Residue | . / 201 |
| Chain | KG / 5 |
| Non-redundant | True |
| Interacting RNA chains | BA/5, AA/1 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | AA/1: rRNA, BA/5: rRNA |
| RNA family global | rRNA |
| Volume | 358.44 Å3 |
| Hydrophobicity | 0.315 |
| Hydrophilicity | 1.791 |
| Buriedness | 0.754 |
| Don/acc character | 0.337 |
| SiteScore | 0.823 |
| D Score | 0.533 |
| Kd | — |
| Compound | T1C |
| Residue | . / 205 |
| Chain | OG / 5 |
| Non-redundant | True |
| Interacting RNA chains | BA/5, AA/1 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | AA/1: rRNA, BA/5: rRNA |
| RNA family global | rRNA |
| Volume | 465.11 Å3 |
| Hydrophobicity | 0.016 |
| Hydrophilicity | 1.455 |
| Buriedness | 0.670 |
| Don/acc character | 1.022 |
| SiteScore | 0.981 |
| D Score | 0.868 |
| Kd | — |