Complex 6ydw
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 4.20 |
| System mass | 13085.42 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Sus |
| RCSB PDB Entry | 6ydw |
| Reference | Kummer Eva, Ban Nenad. . Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1 The EMBO Journal |
| Equivalence Class |
NR_all_50188.3,
NR_all_52597.3
BGSU version: 4.49 |
| Compound | 5GP |
| Residue | . / 15901 |
| Chain | BP / BA |
| Non-redundant | True |
| Interacting RNA chains | CC/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 228.78 Å3 |
| Hydrophobicity | 0.243 |
| Hydrophilicity | 1.455 |
| Buriedness | 0.630 |
| Don/acc character | 0.684 |
| SiteScore | 1.097 |
| D Score | 0.834 |
| Kd | — |
| Compound | GNP |
| Residue | . / 802 |
| Chain | GP / BC |
| Non-redundant | True |
| Interacting RNA chains | CC/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 574.53 Å3 |
| Hydrophobicity | 0.137 |
| Hydrophilicity | 1.848 |
| Buriedness | 0.817 |
| Don/acc character | 0.624 |
| SiteScore | 1.080 |
| D Score | 0.828 |
| Kd | — |
| Compound | SPM |
| Residue | . / 16801 |
| Chain | YC / AA |
| Non-redundant | True |
| Interacting RNA chains | EA/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | EA/AA: rRNA |
| RNA family global | rRNA |
| Volume | 680.51 Å3 |
| Hydrophobicity | 0.153 |
| Hydrophilicity | 1.244 |
| Buriedness | 0.794 |
| Don/acc character | 2.166 |
| SiteScore | 1.214 |
| D Score | 1.011 |
| Kd | — |
| Compound | SPM |
| Residue | . / 15902 |
| Chain | CP / BA |
| Non-redundant | True |
| Interacting RNA chains | CC/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 605.40 Å3 |
| Hydrophobicity | 0.219 |
| Hydrophilicity | 1.246 |
| Buriedness | 0.802 |
| Don/acc character | 1.787 |
| SiteScore | 1.069 |
| D Score | 1.015 |
| Kd | — |
| Compound | SPM |
| Residue | . / 15903 |
| Chain | DP / BA |
| Non-redundant | True |
| Interacting RNA chains | CC/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 545.71 Å3 |
| Hydrophobicity | 0.097 |
| Hydrophilicity | 1.152 |
| Buriedness | 0.752 |
| Don/acc character | 1.212 |
| SiteScore | 1.036 |
| D Score | 1.015 |
| Kd | — |