Complex 6vui
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.68 |
| System mass | 11.11 kDa |
| Deposition year | 2020 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Caldanaerobacter |
| RCSB PDB Entry | 6vui |
| Reference | Schroeder Griffin M, Dutta Debapratim, Cavender Chapin E, Jenkins Jermaine L, Pritchett Elizabeth M, Baker Cameron D, Ashton John M, Mathews David H, Wedekind Joseph E. 2020. Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation Nucleic Acids Research |
| Equivalence Class |
NR_all_80276.6
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PRF |
| Residue | . / 101 |
| Chain | B / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 262.05 Å3 |
| Hydrophobicity | 0.634 |
| Hydrophilicity | 1.172 |
| Buriedness | 0.707 |
| Don/acc character | 1.276 |
| SiteScore | 1.023 |
| D Score | 0.811 |
| Kd | — |